Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802346.6a.15b.48c.31a.28a with 12 members (Derived by automated computational analysis using gene prediction method Gnomon)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Sauria / Lepidosauria /

Episquamata /

Completeness score: 0.92

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

84.9%

This HOG has 1227 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0999052	Bacteria	472		53.8%	2
HOG:E0994820	Bacteria	273		61.9%	2
HOG:E0994914	Bacteria	205		48.3%	2
HOG:E0307721	Euphyllophyta	143		79.0%	2
HOG:E0805761	Eukaryota	109		88.1%	2
HOG:E0475117	Pezizomycotina	94		52.1%	2
HOG:E0484491	Fungi	34		85.3%	2
HOG:E0308923	Euphyllophyta	27		63.0%	2
HOG:E0900899	f__Pseudonocardiaceae	17		41.2%	2
HOG:E0825916	Eukaryota	13		61.5%	2
HOG:E0893044	g__Streptomyces	13		61.5%	2
HOG:E0838645	p__Armatimonadota	12		41.7%	2
HOG:E0315058	Embryophyta	10		80.0%	2
HOG:E0362762	Puccinia	9		44.4%	2
HOG:E0830179	Eukaryota	6		66.7%	2
HOG:E0363558	Puccinia	5		100.0%	2
HOG:E0423606	Pleosporineae	5		80.0%	2
HOG:E0787606	Eumetazoa	5		80.0%	2
HOG:E0914684	c__Actinomycetia	5		80.0%	2
HOG:E0952140	c__Alphaproteobacteria	5		100.0%	2
HOG:E1029415	LUCA	5		60.0%	2
HOG:E0130451	Sarcocystidae	4		75.0%	2
HOG:E0662484	Protostomia	4		75.0%	2
HOG:E0824991	Eukaryota	4		75.0%	2
HOG:E0895083	f__Streptomycetaceae	4		75.0%	2

Showing 1 to 25 of 1226 rows rows per page